The following are closely related studies:

1. Lee JC, Stiles D, Lu J, Cam MC. A detailed transcript-level probe annotation reveals alternative splicing based microarray platform differences. BMC Genomics. 2007 Aug 20;8:284. Pubmed

2. Lu J, Lee JC, Salit ML, Cam MC. Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: high-resolution annotation for microarrays. BMC Bioinformatics. 2007 Mar 29;8:108. Pubmed

3. Carter SL, Eklund AC, Mecham BH, Kohane IS, Szallasi Z. Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements. BMC Bioinformatics, ( (2005) ) 6, : 107. 40. Pubmed

4. Dai M, Wang P, Boyd AD, Kostov G, Athey B, Jones EG, Bunney WE, Myers RM, Speed TP, Akil H, Watson SJ, Meng F. Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data. Nucleic Acids Res, ( (2005) ) 33, (20): e175. Pubmed

5. Gautier L, Moller M, Friis-Hansen L, Knudsen S. Alternative mapping of probes to genes for Affymetrix chips. BMC Bioinformatics, ( (2004) ) 5, : 111.Pubmed

AffyProbeMiner is a joint development of the Genomics and Bioinformatics Group, Laboratory of Molecular Pharmacology (LMP), Center for Cancer Research (CCR) National Cancer Institute (NCI) and Department of Biostatistics, Bioinformatics, and Biomathematics, Georgetown University Medical Center. If you have any problems, questions or feedback on the tool, please email us.

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