AffyProbeMiner logo Department of Biostatistics, Bioinformatics and Biomathematics Center for Information Technology Genomics and Bioinformatics Group

Remap any commercial or custom short oligo chip


Step 1:Select Affymetrix Chip:
 
Affymetrix chip:
 
or Load FASTA format probe sequence file and Affymetrix CDF file:
 
Probe sequence file:
Sample sequence file
 
Affymetrix definition file:
Sample Affymetrix definition file

Step 2: Select parameters:
 
Organism:
 
Remap according to:   transcript-consistent
    gene-consistent
 
Use complete coding sequences from:   RefSeq plus GenBank
    RefSeq only
 
Accept only probe sets that are:   Consistent
    Unique
 
Minimum number of probes in remapped probe set:
 
Maximum number of mismatches allowed during mapping:

Step 3: Enter email address:
 

E-mail address for results notification.

Step 4: Submit query:
 

An email will be sent when results are ready for download.
All results will be deleted in three days.

AffyProbeMiner is a joint development of the Genomics and Bioinformatics Group, Laboratory of Molecular Pharmacology (LMP), Center for Cancer Research (CCR) National Cancer Institute (NCI) and Department of Biostatistics, Bioinformatics, and Biomathematics, Georgetown University Medical Center. If you have any problems, questions or feedback on the tool, please email us.

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