AffyProbeMiner logo Department of Biostatistics, Bioinformatics and Biomathematics Center for Information Technology Genomics and Bioinformatics Group

Instructions for using the downloaded package

In the package, besides the README file, there are four directories under:

  • proberedefine: scripts for remapping and regrouping probes
  • targetsequence: our validated complete coding sequences and RefSeq releases
  • resource: files necessary for redefining probe sets
  • testdata: sample data

README provides a sample run for a linux or unix machine. The Remapped CDF User Guide provides complete details for using the remapped CDFs.

AffyProbeMiner is a joint development of the Genomics and Bioinformatics Group, Laboratory of Molecular Pharmacology (LMP), Center for Cancer Research (CCR) National Cancer Institute (NCI) and Department of Biostatistics, Bioinformatics, and Biomathematics, Georgetown University Medical Center. If you have any problems, questions or feedback on the tool, please email us.

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